Stem-loop cme-MIR390b

Accession

MI0018164

Description

Cucumis melo cme-MIR390b precursor miRNA

Literature search

1 open access papers mention cme-MIR390b
(7 sentences)

Sequence

1390 reads, 745.0 reads per million, 21 experiments

uuaguauggaagaaccuguaAAGCUCAGGAGGGAUAGCGCCaauuaauauuacaaaaauuucauucaaagcuucacacuuugcuuuuguugauggCGCUAUCUAUCCUGAGUUUCAuagcuucuucuugcucga
..((((.(((((((.((((.((((((((((.(((((((((((.((((((.................(((((..........)))))))))))))))))))))).)))))))))).)))).)))))))))))...

Structure

-uu    u       c    a          G           a      uuacaaaaauuucauuc     uuca 
   agua ggaagaa cugu AAGCUCAGGA GGAUAGCGCCa uuaaua                 aaagc    c
   |||| ||||||| |||| |||||||||| ||||||||||| ||||||                 |||||     
   ucgu ucuucuu gauA UUUGAGUCCU UCUAUCGCggu aguugu                 uuucg    a
agc    -       c    C          A           -      -----------------     uuuc 

Annotation confidence High

Genome context

Unknown

Mature cme-miR390b-5p

• Accession: MIMAT0022750
• Description: Cucumis melo cme-miR390b-5p mature miRNA
• Sequence: 21 - AAGCUCAGGAGGGAUAGCGCC - 41
• Evidence: experimental ; cloned [1]

Mature cme-miR390b-3p

• Accession: MIMAT0057839
• Description: Cucumis melo cme-miR390b-3p mature miRNA
• Sequence: 96 - CGCUAUCUAUCCUGAGUUUCA - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 21533245
   RNA captor: a tool for RNA characterization
   "Clepet C"
   "PLoS One (2011) 6:e18445