Stem-loop cme-MIR168

Accession

MI0018177

Description

Cucumis melo cme-MIR168 precursor miRNA

Literature search

2 open access papers mention cme-MIR168
(8 sentences)

Sequence

46186 reads, 17760.0 reads per million, 25 experiments

ggucucuaauUCGCUUGGUGCAGGUCGGGAaccgcuucgcucagccuacgguuuacguuuugucguuggccgguccuucuucauuuuccuuuuuuguucuucucugcuuuuguuuuuugcuuaauuucuuugccgcugugcgguguuaucuuguugcgaaaaugugugggcgaauuggauCCCGCCUUGCAUCAACUGAAUcggaaaccg
(((.(((.(((((.((((((((((.(((((.(((.((((((((..(..(((((.(((......))).))))).........................................(((((((..........((((((...))))))..........))))))).)..)))))))).))).))))).)))))))))).))))).))).))).

Structure

-   c   a     C          U     a   c        gc uacgguuuacguuuugucguuggccgguccuucuucauuuuccuuuuuuguucuucucugcuuuugu       uuaauuucuu      u 
 ggu ucu auUCG UUGGUGCAGG CGGGA ccg uucgcuca  c                                                                   uuuuugc          ugccgc  
 ||| ||| ||||| |||||||||| ||||| ||| ||||||||  |                                                                   |||||||          |||||| g
 cca agg UAAGU AACUACGUUC GCCCu ggu aagcgggu  g                                                                   aaaagcg          guggcg  
g   a   c     C          C     a   u        gu ------------------------------------------------------------------u       uuguucuauu      u 

Annotation confidence High

Genome context

Unknown

Mature cme-miR168-5p

• Accession: MIMAT0022751
• Description: Cucumis melo cme-miR168-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGA - 30
• Evidence: experimental ; cloned [1]

Mature cme-miR168-3p

• Accession: MIMAT0057840
• Description: Cucumis melo cme-miR168-3p mature miRNA
• Sequence: 181 - CCCGCCUUGCAUCAACUGAAU - 201
• Evidence: experimental ; unknown

References

1. PubMed ID: 21533245
   RNA captor: a tool for RNA characterization
   "Clepet C"
   "PLoS One (2011) 6:e18445