miRBase entry: mtr-MIR5210

Stem-loop mtr-MIR5210


Accession
MI0018250
Description
Medicago truncatula mtr-MIR5210 precursor miRNA


Sequence


uauguugaacaccuugacccgcacauuuagccuguuauuuuaccuucauuguugaaguuuugaauucugcucaaaacuagcucgcUAAAUGUGUUGGAAUUAAGGUUuuuugauggu
...((((((.(((((((((.(((((((((((..((((.......((((....))))(((((((.......)))))))))))..))))))))))).))..)))))))..))))))...

Structure
uau      -c       --  c           cu    uuuuaccuucauuguugaa       au 
   guugaa  accuuga  cc gcacauuuagc  guua                   guuuuga  u
   ||||||  |||||||  || |||||||||||  ||||                   |||||||  c
   uaguuu  UGGAAUU  GG UGUGUAAAUcg  cgau                   caaaacu  u
ugg      uU       AA  U           cu    -------------------       cg 


Annotation confidence Low
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Genome context
chr3: 22394767-22394883 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5210
Name Accession Chromosome Start End Strand Confidence




Database links


References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553