Stem-loop mtr-MIR5211

Accession

MI0018251

Description

Medicago truncatula mtr-MIR5211 precursor miRNA

Sequence

ucagggaauccugUCGCAGGAGUGAUGGGACCGGCcuaugguacauauaugaauauuuaugauaugaauauuaucauauaguggugccauccuccugcgacaugauucccuucaa
..((((((((.(((((((((((.(((((.((((...(((((((...((((..(((((...)))))..)))))))))))...)))).)))))))))))))))).))))))))....

Structure

--uc        c           U     G    GCc       cau    ga     u 
    agggaauc ugUCGCAGGAG GAUGG ACCG   uauggua   auau  auauu  
    |||||||| ||||||||||| ||||| ||||   |||||||   ||||  ||||| a
    ucccuuag acagcguccuc cuacc uggu   auacuau   uaua  uauag  
aacu        u           -     g    gau       ---    ag     u 

Annotation confidence Not enough data

Genome context

chr6: 2484503-2484617 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5211

Mature mtr-miR5211

• Accession: MIMAT0021144
• Description: Medicago truncatula mtr-miR5211 mature miRNA
• Sequence: 14 - UCGCAGGAGUGAUGGGACCGGC - 35
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010