Stem-loop mtr-MIR2592ac

Accession

MI0018265

Description

Medicago truncatula mtr-MIR2592ac precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ac
(2 sentences)

Sequence

guuugaauugucccauccagaguaagacaauuguuguacuuggaauguacauuacaacuacaacaauugucuuaccuuugaaugggguaaauucaaacuugccaaaCAACAGGACUCAAGCAUUUCGCccgacauucauguuuuuccuuugaaaagaauaaauuuuuguuaggcuugccuuagaugaugguauucaagugccaacgaaaugagguucauuccuugacacuucaauaccuucaucuaaaccauccuaacaagaauuuaaucuuuucaaaggaaaaacaugaaugucgggcgaauguugaggacuugucguuuggcaaguuugaauuaccccauuucagagguaagacgauuguuguaguuggaaugcaccuuacccuaccuaaugacgaucuucuggcggaaucaaacuuu
((((((....(((...(((((...(((...(((((((....((((.((.(((..((((((((((((((((((((((((((((((((((((.((((((((((((((((.(((((.(((((.((((.((((((((((((((((((((((((((((((((.(((((((((((((((..((..((((((((.((((((.(((((.(((.(((.(((...)))))).))).))))).)))))).))))))))..)).))))))))))))))).)))))))))))))))))))))))))))))))))))))))))..))))).)))))))))))))))))))))))).))))))))))))))))))))))))))))..))).)).)).)).......))))))))))))))).))).))))))...

Structure

---      auug   cau     gua   caa       ---acuu  -  u  a   ua                            -        a                A     -A     G    U                                a               cu  cc        u      c     c   c   a   g 
   guuuga    ucc   ccaga   aga   uuguugu       gg aa gu cau  caacuacaacaauugucuuaccuuugaa ugggguaa uucaaacuugccaaaC ACAGG  CUCAA CAUU CGCccgacauucauguuuuuccuuugaaaaga uaaauuuuuguuagg  ug  uuagauga gguauu aagug caa gaa uga  
   ||||||    |||   |||||   |||   |||||||       || || || |||  |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||  ||  |||||||| |||||| ||||| ||| ||| ||| g
   caaacu    agg   ggucu   ucu   agcagua       cc uu ca gua  guugauguuguuagcagaauggagacuu accccauu aaguuugaacgguuug uguuc  gaguu guaa gcgggcuguaaguacaaaaaggaaacuuuucu auuuaagaacaaucc  ac  aaucuacu ccauaa uucac guu cuu acu  
uuu      ---a   --c     ---   ---       auccauc  a  c  c   ag                            u        -                c     ag     -    -                                a               -u  ca        u      c     a   c   -   u 

Annotation confidence Not enough data

Genome context

chr1: 4044329-4044748 [-]

Mature mtr-miR2592ac

• Accession: MIMAT0021159
• Description: Medicago truncatula mtr-miR2592ac mature miRNA
• Sequence: 107 - CAACAGGACUCAAGCAUUUCGC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010