Stem-loop mtr-MIR2592am

Accession

MI0018275

Description

Medicago truncatula mtr-MIR2592am precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592am
(2 sentences)

Sequence

33860 reads, 270.0 reads per million, 111 experiments

aagucaaacuugccaaaCAACAGGACUCAAGCAUUUCGCcccgcauucauguuuuuccuuugaaaagaauaaauuuuguuagacuugcuuuagauggugguauucaagugccaaugaaaugauguucauuccuugacacuuaaUACCUUCAUCUAAACCAGCauaacaagaauuuaaucuuuucaaaggaaaaacaugaacguugggcaaaaugcuugagucauggucguuuggcaaguuugaauu
...(((((((((((((((..((.(((((((((((((.((((.((.(((((((((((((((((((((((.((((((((((((..((.(.(((((((((.((((((.(((((.(((.(((.(((...)))))).))).))))))))))).)))))))))).))..)))).)))))))).))))))))))))))))))))))).)).)))).))))))))))))).))...)))))))))))))))...

Structure

aag               -AA  G             C    c  a                       a        -    ga  u c         u      c     c   u   a   u 
   ucaaacuugccaaaC   CA GACUCAAGCAUUU GCcc gc uucauguuuuuccuuugaaaaga uaaauuuu guua  cu g uuuagaugg gguauu aagug caa gaa uga  
   |||||||||||||||   || ||||||||||||| |||| || ||||||||||||||||||||||| |||||||| ||||  || | ||||||||| |||||| ||||| ||| ||| ||| g
   aguuugaacgguuug   gu cugaguucguaaa cggg ug aaguacaaaaaggaaacuuuucu auuuaaga caau  GA C AAAUCUACU CCAUaa uucac guu cuu acu  
uua               cug  a             a    u  c                       a        a    aC  C -         U      -     a   c   -   u 

Annotation confidence Low

Genome context

chr4: 38243122-38243367 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592am

Mature mtr-miR2592am-5p

• Accession: MIMAT0021169
• Description: Medicago truncatula mtr-miR2592am-5p mature miRNA
• Sequence: 18 - CAACAGGACUCAAGCAUUUCGC - 39
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592am-3p

• Accession: MIMAT0055050
• Description: Medicago truncatula mtr-miR2592am-3p mature miRNA
• Sequence: 144 - UACCUUCAUCUAAACCAGC - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010