Stem-loop mtr-MIR5216b

Accession

MI0018280

Description

Medicago truncatula mtr-MIR5216b precursor miRNA

Sequence

aauauucauuaugggcucagugacaguugccguugcuugagucaaaguaguaccgauagaggccaaguucgccccaggaaucgggccacuguuagcaguaccagaagugccugcugcaguaUUAGGAGUGAAAAACGGUGGAAguccauaaggaaaccc
....(((.(((((((((.........((((((((..((.(.((.................((((..((((.......))))..))))(((((.((((((((.....))).)))))))))).....)).).)).)))))))).))))))))).)))....

Structure

aaua   a         cagugacag        gc  g g  aaaguaguaccgauagaggccaaguucgccccaggaaucgggcc     u     -   c 
    uuc uuaugggcu         uugccguu  uu a uc                                            acugu agcag uac a
    ||| |||||||||         ||||||||  || | ||                                            ||||| ||||| ||| g
    aag aauaccugA         GGUGGCAA  AA U AG                                            ugacg ucguc gug a
ccca   g         --------A        -A  G G  ---------------------------------------GAUUa     -     c   a 

Annotation confidence Not enough data

Genome context

chr2: 15937619-15937777 [+]

Mature mtr-miR5216b

• Accession: MIMAT0021174
• Description: Medicago truncatula mtr-miR5216b mature miRNA
• Sequence: 122 - UUAGGAGUGAAAAACGGUGGAA - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010