Stem-loop mtr-MIR2592ap

Accession

MI0018293

Description

Medicago truncatula mtr-MIR2592ap precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592ap
(2 sentences)

Sequence

uuaggguaaggugcauucuaacuacaacaauugucuuaccucugaaaugggguaauucaaauuugccaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucucguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagccuaacaacaauuuauucuuuucaaaggaaaacaugaaugucggacgaaaugcuugagucauguuguuugaccaguuugaauuuacccuauucaaagauaagacaauuguuguaguuggaaugcacauuucaacua
.(((......((((((((((((((((((((((((((((.((.((((.((((((((((((((((.(.((((((((...(((((((((((((((.((((((((((((((((.((((((((((((.((((((...(((((((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).))))))))...)))))).)))))))))))))))))))))))))))).)))))))))))))))..)))))))).).)))))))).)))))))))))).)).)))))))))))))))))))))))))))).......)))

Structure

u   -gguaag                            c  c    a        -        u c        cag               c                u            u      cuc        - G         A     -          -       a 
 uag       gugcauucuaacuacaacaauugucuua cu ugaa ugggguaa uucaaauu g caaacggc   gacucaagcauuucg ucggcauucauguuuu ccuuugaaaaga uaaauu   guuAGGCU G UUUAGAUGA GGUAu uaagugucaa ggaauga  
 |||       |||||||||||||||||||||||||||| || |||| |||||||| |||||||| | ||||||||   ||||||||||||||| |||||||||||||||| |||||||||||| ||||||   |||||||| | ||||||||| ||||| |||||||||| ||||||| c
 auc       cacguaagguugauguuguuaacagaau ga acuu aucccauu aaguuuga c guuuguug   cugaguucguaaagc ggcuguaaguacaaaa ggaaacuuuucu auuuaa   caauccga c aaaucuacu ccaua guucacgguu cuuuacu  
-   aacuuua                            a  a    -        u        c a        -ua               a                -            u      caa        a g         a     a          g       c 

Annotation confidence Not enough data

Genome context

AC146550.40: 50348-50699 [-]

Mature mtr-miR2592ap

• Accession: MIMAT0021187
• Description: Medicago truncatula mtr-miR2592ap mature miRNA
• Sequence: 136 - AGGCUGGUUUAGAUGAAGGUA - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010