Stem-loop mtr-MIR2592be

Accession

MI0018308

Description

Medicago truncatula mtr-MIR2592be precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592be
(2 sentences)

Sequence

auaaaaaguuugauuccgccagaagaucgucauuaguuaggguaaugugcauuccaacuauaacuauugucuuacaucugaaauuggguaauucaaacuugccaaacgacaaguccucaacauucgcccaacauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuugaaguguaaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagcauaacaaaaauuuauucuuuucauaggaaaaacaugaaugucgggcgaaaugcuugaguccuguuguuuggcgaauuugaauuuacccaauucaaagguaagacaauuguuguaguuggaaugcccauuccaagaacaacaauugucuuacucuggauggggcaauucaaacuuguua
.....((((((((((((((((((((((.((..((.(((..((.((((.((((((((((((((((.((((((((((...((((.((((((((((((((.(((((((((((((.(..((((((((((((((.(((((((((((((((((.((((((((.((((((.((((((.((((.(((((((((.((((((.((((((...(((((((...)))))))....)))))).)))))).))))))))).).))).)))))).)))))).)))))))).))))))))))))))))).))))).)))).)))))..)))))))))))))).)))))).))))))))))))...)))))))))).)))))))))))))))).))))))...)))))..)).))))...))))).)))))....))))))))....

Structure

auaaa        ----     -     ---    c  ca  a   -ag  u    u                u          auc    a        -      c             a uc     -    -     a                 u        u      c      G   - G         A      g      -aaa       a 
     aaguuuga    uuccg ccaga   agau gu  uu guu   gg aaug gcauuccaacuauaac auugucuuac   ugaa uuggguaa uucaaa uugccaaacgaca g  cucaa cauu cgccc acauucauguuuuuccu ugaaaaga uaaauu uuguuA GCU G UUUAGAUGA GGUAuu aagugu    ggaauga  
     ||||||||    ||||| |||||   |||| ||  || |||   || |||| |||||||||||||||| ||||||||||   |||| |||||||| |||||| ||||||||||||| |  ||||| |||| ||||| ||||||||||||||||| |||||||| |||||| |||||| ||| | ||||||||| |||||| ||||||    ||||||| c
     uucaaacu    ggggu ggucu   ucug ua  aa caa   cc uuac cguaagguugauguug uaacagaaug   acuu aacccauu aaguuu agcgguuuguugu c  gaguu guaa gcggg uguaaguacaaaaagga acuuuucu auuuaa aacaau cga c aaaucuacu ccauaa uucacg    cuuuacu  
-auug        uaac     a     cau    u  ac  -   gaa  -    c                u          gaa    -        u      a             - cu     c    a     c                 u        u      a      a   a g         a      g      guug       c 

Annotation confidence Not enough data

Genome context

chr7: 22606713-22607142 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592be

Mature mtr-miR2592be

• Accession: MIMAT0021202
• Description: Medicago truncatula mtr-miR2592be mature miRNA
• Sequence: 170 - AGGCUGGUUUAGAUGAAGGUA - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010