Stem-loop mtr-MIR5228

Accession

MI0018317

Description

Medicago truncatula mtr-MIR5228 precursor miRNA

Sequence

ugcaacuuUCUGGUGUACAACUUGAUGGAgauuuuaaauaucuuucaagaaauuugagauggcuacacuggaauggauuuccguuagcaugcauaccuucaaacuucuaucaaagaaauauaguuuccauugaguuagaaaacagcagugucaa
.........(((.(((.((((((((((((((((.......(((((..((((.(((((((((((((.((.((((.....))))))))))...)))...)))))).))))...))))).....))))))))))))))).)...))).)))......

Structure

ugcaacuuU   G   --A -               uuaaaua     -ca    a      ---   ---    c  u    u 
         CUG UGU   C AACUUGAUGGAgauu       ucuuu   agaa uuugag   aug   gcua ac ggaa g
         ||| |||   | |||||||||||||||       |||||   |||| ||||||   |||   |||| || |||| g
         gac aca   g uugaguuaccuuuga       agaaa   ucuu aaacuu   uac   cgau ug ccuu a
---aacugu   g   aaa a               --uauaa     cua    c      cca   gua    -  -    u 

Annotation confidence Not enough data

Genome context

chr4: 3475204-3475357 [+]

Mature mtr-miR5228

• Accession: MIMAT0021212
• Description: Medicago truncatula mtr-miR5228 mature miRNA
• Sequence: 9 - UCUGGUGUACAACUUGAUGGA - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010