Stem-loop mtr-MIR5243

Accession

MI0018344

Description

Medicago truncatula mtr-MIR5243 precursor miRNA

Sequence

aaaugcuauaccuacaugguuuuagugcugaaaauggaauucaagugcugaccgacaaaucccucauaaaaguugauggcaaugguugugugagaaugcaugacuuaguucaagacaUGGGCAGAGAAAUCGUGAGGCaggaaucaac
..........(((.(((((((((..((((.(.....(((((((.((.((.((((((....((.(((.......))).)).....)))).)).))...)).)))....))))......).))))..))))))))))))...........

Structure

-aaaugcuaua   a         ag    g -aaaug    ----   a  --g  g  -    -aaau  c   ua 
           ccu caugguuuu  ugcu a      gaau    uca gu   cu ac cgac     cc uca  a
           ||| |||||||||  |||| |      ||||    ||| ||   || || ||||     || |||  a
           GGA GUGCUAAAG  ACGG U      cuug    agu cg   ga ug guug     gg agu  a
caacuaaggaC   -         AG    G acagaa    auuc   a  uaa  g  u    guaac  u   ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature mtr-miR5243

• Accession: MIMAT0021239
• Description: Medicago truncatula mtr-miR5243 mature miRNA
• Sequence: 118 - UGGGCAGAGAAAUCGUGAGGC - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010