Stem-loop mtr-MIR5246

Accession

MI0018347

Description

Medicago truncatula mtr-MIR5246 precursor miRNA

Sequence

uagguaaaacaacacuugaucuggcuguuuauaauuugaUUGCAGACAGCUUUGAAGGUUuauguuuucu
..((.((((((..((((.....((((((((.((((...)))).))))))))....))))...))))))))

Structure

ua  u      -ac    gaucu        a    u 
  gg aaaaca   acuu     ggcuguuu uaau  
  || ||||||   ||||     |||||||| |||| u
  uc uuuugu   UGGA     UCGACAGA GUUa  
--  -      auU    -AGUU        C    g 

Annotation confidence Not enough data

Genome context

chr8: 24009245-24009314 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mtr-MIR5246

Mature mtr-miR5246

• Accession: MIMAT0021242
• Description: Medicago truncatula mtr-miR5246 mature miRNA
• Sequence: 40 - UUGCAGACAGCUUUGAAGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010