Stem-loop mtr-MIR5248

Accession

MI0018349

Description

Medicago truncatula mtr-MIR5248 precursor miRNA

Sequence

ucucuuaagcUUUUUAGUUGGCAUGCAUUCAgaacuccaaguccuaaagaaaguuacgcugaccuuuguagagauguuguugaguacugugggggguugccgguagcucuugaaauccuu
..((...((((.....((((((((.(...(((.(((((((((((((..(((.((((...)))).))).))).))).)))..)))).)))....).).)))))))))))...)).......

Structure

-----uc  uua    UUUUA       - G -AUU   a    --   -   -   aa   a    c 
       uc   agcU     GUUGGCA U C    CAg acuc  caa guc cua  gaa guua  
       ||   ||||     ||||||| | |    ||| ||||  ||| ||| |||  ||| |||| g
       ag   ucga     uggccgu g g    guc ugag  guu uag gau  uuu cagu  
uuccuaa  uuc    -----       u g gggu   a    uu   g   a   -g   c    c 

Annotation confidence Not enough data

Genome context

chr4: 6773762-6773881 [-]

Mature mtr-miR5248

• Accession: MIMAT0021244
• Description: Medicago truncatula mtr-miR5248 mature miRNA
• Sequence: 11 - UUUUUAGUUGGCAUGCAUUCA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010