Stem-loop mtr-MIR5249

Accession

MI0018350

Description

Medicago truncatula mtr-MIR5249 precursor miRNA

Sequence

caugugcaaaACUUAGGGGGCAGUUUUGUAGucuuuuuucuuugagggccaaaaucgcaacuuuggaaaaguuagggggcuaaaacugcuaucaagccuuauuuuuaaacaauucucaucgauucggcuuucaucuauuuauuuuaggcuuaauugcacuuuuugcccacuaucuuuccaaaaguugcgauuuuggcccucuaccuaauuaaaauacaaaacagccuccuauguauugguguaac
......(((.((.((((((((.((((((((.............((((((((((((((((((((((((((.(.(((.((((.((((.(((.((.((((((..............................................)))))).)).))).)))).)))).))).)))))).))))))))))))))))))))).............)))))))).)))))))).)).))).......

Structure

-caugug   a  U        A        Gucuuuuuucuuu                     -     a u   g    u    c   u  c      uauuuuuaaacaauucucaucg 
       caa AC UAGGGGGC GUUUUGUA             gagggccaaaaucgcaacuuu ggaaa g uag gggc aaaa ugc au aagccu                      a
       ||| || |||||||| ||||||||             ||||||||||||||||||||| ||||| | ||| |||| |||| ||| || ||||||                       
       guu ug auccuccg caaaacau             cucccgguuuuagcguugaaa ccuuu c auc cccg uuuu acg ua uucgga                      u
caaugug   a  u        a        aaaauuaauccau                     a     - u   a    u    c   u  a      uuuuauuuaucuacuuucggcu 

Annotation confidence Not enough data

Genome context

chr3: 12779582-12779826 [+]

Mature mtr-miR5249

• Accession: MIMAT0021245
• Description: Medicago truncatula mtr-miR5249 mature miRNA
• Sequence: 11 - ACUUAGGGGGCAGUUUUGUAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010