Stem-loop mtr-MIR5260

Accession

MI0018364

Description

Medicago truncatula mtr-MIR5260 precursor miRNA

Sequence

gucaacaaauUUUGUAUUGUUGACAUGGCUUuguugcaauuuaaucaaggaaauuacacucgaugcagauauauuucuaacaauacaaaaacaaacaa
.........((((((((((((((.(((..(((((.........(((.((.........)).))))))))..))).)).))))))))))))........

Structure

gucaacaaa            -  C   GC     ugcaauuua   a  gaa 
         uUUUGUAUUGUU GA AUG  UUugu         auc ag   a
         |||||||||||| || |||  |||||         ||| ||   u
         aaaacauaacaa cu uau  agacg         uag uc   u
-aacaaaca            u  u   au     ---------   c  aca 

Annotation confidence Not enough data

Genome context

chr8: 18805493-18805590 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5260

Mature mtr-miR5260

• Accession: MIMAT0021260
• Description: Medicago truncatula mtr-miR5260 mature miRNA
• Sequence: 11 - UUUGUAUUGUUGACAUGGCUU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010