miRBase entry: mtr-MIR5272a

Stem-loop mtr-MIR5272a


Accession
MI0018405
Description
Medicago truncatula mtr-MIR5272a precursor miRNA


Sequence

30509 reads, 248.0 reads per million, 111 experiments
uuggauguGAAUUGAUUUAUGUUUGGAUACACuuauuuaaaagugauucauaugagUUGAUGUUGUUUGGAUAGU
((.((.....(((((((((((..(((((.(((((......))))))))))))))))))))).....)).))....

Structure
----  g  uguGA           UU     A     au 
    uu ga     AUUGAUUUAUG  UGGAU CACuu  u
    || ||     |||||||||||  ||||| |||||   
    AG UU     UAGUUgaguau  acuua gugaa  u
UGAU  G  UGUUG           --     -     aa 


Annotation confidence Low
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Genome context
chr2: 8872779-8872853 [+]

Database links

Mature mtr-miR5272a-5p

Accession MIMAT0021302
Description Medicago truncatula mtr-miR5272a-5p mature miRNA
Sequence 9 - GAAUUGAUUUAUGUUUGGAUACAC - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5272a-3p

Accession MIMAT0055166
Description Medicago truncatula mtr-miR5272a-3p mature miRNA
Sequence 57 - UUGAUGUUGUUUGGAUAGU - 75
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010