Stem-loop mtr-MIR5280

Accession

MI0018422

Description

Medicago truncatula mtr-MIR5280 precursor miRNA

Sequence

aacaggcuuacuaugagaaacggcucaauccaucacgggccguuuuuaauuacaacccauuaauaaauaucauuuuauuuagggcaauauuguaucaauucuaauuauaauauugcacugaauaaaaggauacuuauuaaugggcugUAAUUAGAAACGGGCCGUGAUGGGuugggcuguu
..................((((((((((((((((((((.(((((((((((((((.(((((((((((.((((.((((((((((.(((((((((((...........))))))))))).)))))))))).)))).))))))))))).))))))))))))))).))))))))))))))))))))

Structure

aacaggcuuacuaugaga                    g               a           a    a          g           ucaa 
                  aacggcucaauccaucacgg ccguuuuuaauuaca cccauuaauaa uauc uuuuauuuag gcaauauugua    u
                  |||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||    u
                  uugucggguuGGGUAGUGCC GGCAAAGAUUAAUgu ggguaauuauu auag aaaauaaguc cguuauaauau    c
------------------                    G               c           c    g          a           uaau 

Annotation confidence Not enough data

Genome context

chr7: 18599955-18600135 [-]

Mature mtr-miR5280

• Accession: MIMAT0021319
• Description: Medicago truncatula mtr-miR5280 mature miRNA
• Sequence: 148 - UAAUUAGAAACGGGCCGUGAUGGG - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010