Stem-loop mtr-MIR5281e

Accession

MI0018427

Description

Medicago truncatula mtr-MIR5281e precursor miRNA

Sequence

ccaagcaauauacucccgccgguccuauuuauaagagaauuuuuugucaacaaaaguugauguaucuaguuaaaaauucaguccaaauacuguugaccuaaacuucUCUUAUAAAUAGGACCGGAGGGAGuacuucacauaac
..........(((((((.(((((((((((((((((((((.(((..(((((((....(((........................)))....)))))))..))).))))))))))))))))))))).)))))))...........

Structure

-ccaagcaaua       g                     u   uu       aaag   auguaucuagu 
           uacuccc ccgguccuauuuauaagagaa uuu  gucaaca    uug           u
           ||||||| ||||||||||||||||||||| |||  |||||||    |||            
           auGAGGG GGCCAGGAUAAAUAUUCUcuu aaa  caguugu    aac           a
caauacacuuc       A                     c   uc       caua   cugacuuaaaa 

Annotation confidence Not enough data

Genome context

chr6: 21484129-21484271 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5281e

Mature mtr-miR5281e

• Accession: MIMAT0021324
• Description: Medicago truncatula mtr-miR5281e mature miRNA
• Sequence: 107 - UCUUAUAAAUAGGACCGGAGGGAG - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010