Stem-loop mtr-MIR5281f

Accession

MI0018428

Description

Medicago truncatula mtr-MIR5281f precursor miRNA

Sequence

uauaguauccuacuaccuccgguucuauuuauaagagaaauuuaggucaacaaaagugaauguauuuggacugaauuuuuaacuagauauaucaacuuuuguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacuuuuuuagga
.......(((((((.((((((((((((((((((((((((.(((.(((((((((((((..((((((((((.............))))))))))..))))))))))))).))).)))))))))))))))))))))))).)))........))))

Structure

uauagua    --------   a                        a   a             ga          acuga 
       uccu        acu ccuccgguucuauuuauaagagaa uuu ggucaacaaaagu  auguauuugg     a
       ||||        ||| |||||||||||||||||||||||| ||| |||||||||||||  ||||||||||     u
       agga        uGA GGAGGCCAGGAUAAAUAUUCUcuu aaa ccaguuguuuuca  uauauagauc     u
-------    uuuuuuca   G                        a   c             ac          aauuu 

Annotation confidence Not enough data

Genome context

chr4: 38919901-38920052 [+]

Mature mtr-miR5281f

• Accession: MIMAT0021325
• Description: Medicago truncatula mtr-miR5281f mature miRNA
• Sequence: 116 - UCUUAUAAAUAGGACCGGAGGGAG - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010