Stem-loop mtr-MIR5285c

Accession

MI0018448

Description

Medicago truncatula mtr-MIR5285c precursor miRNA

Sequence

aaacacuauuaggauuggagucucuugguuacgggaagggauUGGGACUUUGGGUAGAAUUAGGCGgaagacuuauucuuguaacccauugauuucucuuuguaacgaaacuca
.................((((...((.((((((((.(((((((((.....((((((((((.((........)).)))))....)))))))))))))).)))))))).)))))).

Structure

aaacacuauuaggauug    cuc  g        a         GACUU     ----     U  GCG 
                 gagu   uu guuacggg agggauUGG     UGGGU    AGAAU AG   g
                 ||||   || |||||||| |||||||||     |||||    ||||| ||    
                 cuca   aa caauguuu ucuuuaguu     accca    ucuua uc   a
----------------a    ---  g        c         -----     augu     u  aga 

Annotation confidence Not enough data

Genome context

chr3: 39172452-39172565 [+]

Mature mtr-miR5285c

• Accession: MIMAT0021345
• Description: Medicago truncatula mtr-miR5285c mature miRNA
• Sequence: 43 - UGGGACUUUGGGUAGAAUUAGGCG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010