miRBase entry: aca-mir-24-2

Stem-loop aca-mir-24-2

Accession

MI0018834

Description

Anolis carolinensis aca-mir-24-2 precursor miRNA

Sequence

ggauggacccguccuccggUGCCUACUGAGCUGAUAUCAGuucugauuuuacacacUGGCUCAGUUCAGCAGGAACAGgagucgagcccuaaa
....((.(.((..((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).)))).)).).))....

Structure

ggau  a c  uc    g  G   A         UA     uc  au 
    gg c cg  cucc gU CCU CUGAGCUGA  UCAGu  ug  u
    || | ||  |||| || ||| |||||||||  |||||  ||   
    cc g gc  gagG CA GGA GACUUGACU  GGUca  ac  u
aaau  c a  -u    A  A   C         -C     -c  au

Annotation confidence Not enough data

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Genome context

chr2: 40591310-40591402 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-24-3p

Accession	MIMAT0021900
Description	Anolis carolinensis aca-miR-24-3p mature miRNA
Sequence	57 - UGGCUCAGUUCAGCAGGAACAG - 78
Evidence	experimental Illumina [1]

Mature aca-miR-24-2-5p

Accession	MIMAT0021901
Description	Anolis carolinensis aca-miR-24-2-5p mature miRNA
Sequence	20 - UGCCUACUGAGCUGAUAUCAG - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107