miRBase entry: aca-mir-99a

Stem-loop aca-mir-99a


Accession
MI0018894
Description
Anolis carolinensis aca-mir-99a precursor miRNA


Sequence

ggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguauaaugcaCAAGCUCGCUUCUAUGGGUCuguguc
((((((.(((((((((..(((.((((((.............)))))).)))..))))))))).))))))

Structure
      A         UC   U      gugaa 
ggcaua ACCCGUAGA  CGA CUUGUG     g
|||||| |||||||||  ||| ||||||     u
cugugu UGGGUAUCU  GCU GAACac     a
      C         UC   C      guaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 154034468-154034536 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-99a-5p

Accession MIMAT0021996
Description Anolis carolinensis aca-miR-99a-5p mature miRNA
Sequence 7 - AACCCGUAGAUCCGAUCUUGUG - 28
Evidence experimental
Illumina [1]

Mature aca-miR-99a-3p

Accession MIMAT0021997
Description Anolis carolinensis aca-miR-99a-3p mature miRNA
Sequence 44 - CAAGCUCGCUUCUAUGGGUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107