miRBase entry: aau-MIR172

Stem-loop aau-MIR172


Accession
MI0018980
Description
Acacia auriculiformis aau-MIR172 precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
1 open access papers mention aau-MIR172
(6 sentences)

Sequence

gcagauguagcaucaucaagauucacaugcaaaugcaacaaguggaagugagauuauuuuugaaugauagaugcaaccuucuaaucaaaaucucucucucucucucucucucuguggccacuugguuucuuucggaacUGAGAAUCUUGAUGAUGCUGCAUcagc
((.(((((((((((((((((((((.(((((....))).(((((((..(.((((........((..((.((((.................)))).))..))........))))..)..)))))))(((((....))))))).))))))))))))))))))))).))

Structure
  a                     a  ---ugcaaaugcaa       aa -u    uuauuuuu  au  u    gcaaccu 
gc gauguagcaucaucaagauuc ca              caagugg  g  gaga        ga  ga agau       u
|| ||||||||||||||||||||| ||              |||||||  |  ||||        ||  || ||||       c
cg cUACGUCGUAGUAGUUCUAAG GU              guucacc  u  cucu        cu  cu ucua       u
  a                     A  caaggcuuucuuug       gg gu    cucucucu  cu  c    aaacuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aau-miR172

Accession MIMAT0022673
Description Acacia auriculiformis aau-miR172 mature miRNA
Sequence 139 - UGAGAAUCUUGAUGAUGCUGCAU - 161
Evidence not_experimental

References

  1. PubMed ID: 21729267
    Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
    Wong MM, Cannon CH, Wickneswari R
    BMC Genomics (2011) 12:342