Stem-loop pti-MIR5472

Accession

MI0018990

Description

Phaeodactylum tricornutum pti-MIR5472 precursor miRNA

Sequence

uucuugucauAAAAUGUUGCGCUAGUCCAAGAgcuuuaagaugcuuaccacccuucacaucggcgugccaaauucgaucccgucgauugcuagcgaaaugaaggagcucaagcugacgagagcgaucgcacuuccucagcaucuggaaagcgucaccgauaaaugcaauauugugucuggucauacggggaguccguuacuagcucaagaaaaccauuucgucaacagaagacaacacuacgauucaaucgcaagcuuaaacaacgcagguauucaauuugccgaguccucuaggaugagugccgcauuacagugcuuccg
............(((((.(((((.((((.(((((((...(((((((.(((.((((((..(((.(..((.....(((((...)))))..))..))))..)))))).......(((((.(((.((....))..))).)))))...))).)))))))......(((((.....(((.(.(((((...((((.....)))).)))))).)))......))))).(((.......))).......((((...))))...((.........)).((((.......)))))))..)))).)))).))))).)))))............

Structure

uucuugucauAA     U     A    A    --   ------------------------------------------------------------------------------------------------------------------------------uaa       a   --------------------------------------c      ca   g gu  caaau     c 
            AAUGU GCGCU GUCC AGAg  cuu                                                                                                                                 gaugcuu cca                                       ccuuca  ucg c  gc     ucgau  
            ||||| ||||| |||| ||||  |||                                                                                                                                 ||||||| |||                                       ||||||  ||| |  ||     ||||| c
            uuacg cguga uagg ucuc  gag                                                                                                                                 cugcgaa ggu                                       ggaagu  agc g  cg     agcug  
gccuucgugaca     c     g    a    cu   ccguuuaacuuauggacgcaacaaauucgaacgcuaacuuagcaucacaacagaagacaacugcuuuaccaaaagaacucgaucauugccugaggggcauacuggucuguguuauaacguaaauagcca       a   cuacgacuccuucacgcuagcgagagcagucgaacucga      aa   - au  ---uu     c 

Annotation confidence Not enough data

Genome context

CM000613.1: 761305-761625 [-]

Mature pti-miR5472

• Accession: MIMAT0022105
• Description: Phaeodactylum tricornutum pti-miR5472 mature miRNA
• Sequence: 11 - AAAAUGUUGCGCUAGUCCAAGA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337