Stem-loop pti-MIR5476

Accession

MI0018994

Description

Phaeodactylum tricornutum pti-MIR5476 precursor miRNA

Sequence

gguggucgcggcggaagaggugguugcggugguugcggcgguugucacggucgaggcggucgugguggaggaaaagguaaaccauuuaacaacggcucgacaagcgguaUGACCGACCGCUACUACUCUUUcgaagaguau
.(((.((....((((((((.((((.((((((((((.(.((.(((((..(((((..(.....(((((..(........)..)))))....)..))))).))))).)).).))))).))))).))))))))))))..)).)))

Structure

g   g  gcgg        g    u     -     c g  g     ac     ag cgguc     gg gga 
 gug uc    cggaagag uggu gcggu gguug g cg uuguc  ggucg  g     guggu  a   a
 ||| ||    |||||||| |||| ||||| ||||| | || |||||  |||||  |     |||||  |    
 uau ag    gcUUUCUC AUCA CGCCA CCAGU u gc aacag  ucggc  c     uacca  u   a
-   g  --aa        -    U     G     a g  g     -c     aa -aauu     aa gga 

Annotation confidence Not enough data

Genome context

CM000621.1: 299730-299870 [-]

Mature pti-miR5476

• Accession: MIMAT0022109
• Description: Phaeodactylum tricornutum pti-miR5476 mature miRNA
• Sequence: 110 - UGACCGACCGCUACUACUCUUU - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337