Stem-loop pti-MIR5477

Accession

MI0018995

Description

Phaeodactylum tricornutum pti-MIR5477 precursor miRNA

Sequence

ccggugauccAAAAAUAGAAGACUUUGGAACCcgagauaguguucgcaaacagucaaugaacaaugaaaaaaacuaguaauccugcuuuucauccacggucuucuacuuuguaaaccug
..(((....((((..(((((((((.((((...........((((((...........)))))).(((((......((((....))))))))))))).))))))))).))))...)))..

Structure

cc   gauc    AA         U    ACCcgagauaguguucgcaaacagucaaugaacaa     aaaacu    a 
  ggu    cAAA  UAGAAGACU UGGA                                   ugaaa      agua u
  |||    ||||  ||||||||| ||||                                   |||||      ||||  
  cca    guuu  aucuucugg accu                                   acuuu      ucgu c
gu   -aau    -c         c    -----------------------------------     ------    c 

Annotation confidence Not enough data

Genome context

CM000605.1: 2137385-2137503 [-]

Mature pti-miR5477

• Accession: MIMAT0022110
• Description: Phaeodactylum tricornutum pti-miR5477 mature miRNA
• Sequence: 11 - AAAAAUAGAAGACUUUGGAACC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337