Stem-loop pti-MIR5479

Accession

MI0018997

Description

Phaeodactylum tricornutum pti-MIR5479 precursor miRNA

Sequence

cugggcacccGACGAUGAUUAAGAUUGGAAAGaggccuucucuauacaccgaccauccagauuaugagacgacgcaucaaucaacucaaucuucaggauacgaacagcuacccacuccccgucguucccugccugggaacguucggucgcacgcaacgauacccuguucccgucgaguugauuuguacguguuuguaucgcuucaaaagccuuccugggguguccugaugacaaucuuucgucuuguuacguuguuuuggugcgcuc
..(.(((((.((((((((.((((((..((((((.....((((...(((((......((((....((((..((........))..))))........((((((((((..(((.......(((.(((((((.....)))))))..)))(((.(((.((((......))))..))))))........)))..))))))))))((((...))))....)))))))))...)).))...)))))))))))).).)))))))..))))).)..

Structure

cu g     -c       - U      UG      ggccu  -  uau     gaccau    auuaugagacgacgcaucaaucaacucaaucuucag          gc   -------------------------------ccacucc   -u       u 
  g gcacc  GACGAUG A UAAGAU  GAAAGa     uc uc   acacc      ccag                                    gauacgaaca  uac                                      ccg  cguuccc g
  | |||||  ||||||| | ||||||  ||||||     || ||   |||||      ||||                                    ||||||||||  |||                                      |||  ||||||| c
  c cgugg  uuguugc u guucug  cuuucu     ag ag   ugugg      gguc                                    cuauguuugu  aug                                      ggc  gcaaggg c
cu g     uu       a u      --      --aac  u  ucc     ------    ---------------------cuuccgaaaacuucg          gc   uuuaguugagcugcccuugucccauagcaacgcacgcu   uu       u 

Annotation confidence Not enough data

Genome context

CM000627.1: 444580-444846 [+]

Mature pti-miR5479

• Accession: MIMAT0022112
• Description: Phaeodactylum tricornutum pti-miR5479 mature miRNA
• Sequence: 11 - GACGAUGAUUAAGAUUGGAAAG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337