Stem-loop pti-MIR5483

Accession

MI0019001

Description

Phaeodactylum tricornutum pti-MIR5483 precursor miRNA

Sequence

gagcuggguucaugccugauucaaagaacuguaauuauuaaauggucauucacugucagggaugcaaaucaaaccuauuucaacgguuuugcuuccaacuucauuugaaacgcuugaugaauccuugguuaauacugagccuagugcgaaaaacuggaacuguucuuauauccuuauuuuaauacgggaucggauucgcuguugcacucaggguaaagcucauucuuuccauagucgcuucggugaccAUUUUUUUGGAUCGUGUGAUAUAuaacccgcac
..((.((((((((((..(((((((((((.............(((((((((.........(((.(((((....(((.........)))))))).)))...((((((..........))))))..((((((....))))))......((((.....(((((.((..(((.((((((.....(((((.(.((......)).)))))).....)))))))))..))....)))))...))))...))))))))))))))))))))))))))......))))))..

Structure

ga  u    ------      cu           cuguaauuauuaa         cacugucagggaugcaaaucaaaccuauuucaacgguuuugcuuccaacuucauuugaaacgcuugaugaauccuugguuaauacugagccuagu    aaaac     ---c  uu   a      uauuu     c g  uc 
  gc gggu      ucaugc  gauucaaagaa             auggucauu                                                                                               gcga     uggaa    ug  cuu uauccu     uaaua g ga  g
  || ||||      ||||||  |||||||||||             |||||||||                                                                                               ||||     |||||    ||  ||| ||||||     ||||| | ||   
  cg ccca      AGUGUG  CUAGGUUUUUU             UAccagugg                                                                                               cgcu     accuu    ac  gaa auggga     guugu c cu  g
ca  -    auAUAU      --           -------------         --------------------------------------------------------------------------------------------cuu    --gau     ucuu  uc   -      cucac     - g  ua 

Annotation confidence Not enough data

Genome context

CM000612.1: 523733-524013 [+]

Mature pti-miR5483

• Accession: MIMAT0022116
• Description: Phaeodactylum tricornutum pti-miR5483 mature miRNA
• Sequence: 249 - AUUUUUUUGGAUCGUGUGAUAUA - 271
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337