Stem-loop osa-MIR5513

Accession

MI0019031

Description

Oryza sativa osa-MIR5513 precursor miRNA

Literature search

3 open access papers mention osa-MIR5513
(5 sentences)

Sequence

17 reads, 12 reads per million, 2 experiments

gucauuauucuucaguccguuguccuuugugauaacauaucuguacuuauacguuuguucauuuaggauagacaaggcucaaagccacgcuagcugacauuagccggauauguuaUAACAAAGGACAACAGACUGAagaauaauga
.((((((((((((((((.((((((((((((.((((((((((((.........((((((((.....))))))))..((((...))))..(((((......))))))))))))))))).)))))))))))).))))))))))))))))

Structure

g                c            g            ----------------------uacuuauac        a 
 ucauuauucuucaguc guuguccuuugu auaacauaucug                               guuuguuc u
 |||||||||||||||| |||||||||||| ||||||||||||                               |||||||| u
 aguaauaagaAGUCAG CAACAGGAAACA Uauuguauaggc                               cagauagg u
-                A            A            cgauuacagucgaucgcaccgaaacucggaa        a 

Annotation confidence Not enough data

Genome context

Chr3: 34008003-34008148 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5513

Mature osa-miR5513

• Accession: MIMAT0022146
• Description: Oryza sativa osa-miR5513 mature miRNA
• Sequence: 116 - UAACAAAGGACAACAGACUGA - 136
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207