Stem-loop osa-MIR2275d

Accession

MI0019043

Description

Oryza sativa osa-MIR2275d precursor miRNA

Literature search

14 open access papers mention osa-MIR2275d
(77 sentences)

Sequence

27739 reads, 123.0 reads per million, 108 experiments

uuguucaggcacuggaagugAGAAUUGGAGGAAAACAAACUgauugcugguuguuguuugcaacaguguggcaaacaauguucagCUUGUUUUUCUCCAAUAUCUCAccuucagguugauugcuuga
....((((((((((((.(((((((((((((((((((((.......(((((.((((((((((.((...)).)))))))))).)))))))))))))))))))).)))))).)))))......)))))))

Structure

uugu       ------     a      -               ACUgauu     u          a  a 
    ucaggca      cugga gugAGA AUUGGAGGAAAACAA       gcugg uguuguuugc ac  
    |||||||      ||||| |||||| |||||||||||||||       ||||| |||||||||| || g
    aguucgu      gacuu cACUCU UAACCUCUUUUUGUU       Cgacu guaacaaacg ug  
----       uaguug     c      A               -------     u          g  u 

Annotation confidence High

Genome context

8: 3736806-3736932 [-]

Mature osa-miR2275d-5p

• Accession: MIMAT0056236
• Description: Oryza sativa osa-miR2275d-5p mature miRNA
• Sequence: 21 - AGAAUUGGAGGAAAACAAACU - 41
• Evidence: experimental ; unknown

Mature osa-miR2275d-3p

• Accession: MIMAT0022158
• Description: Oryza sativa osa-miR2275d-3p mature miRNA
• Sequence: 86 - CUUGUUUUUCUCCAAUAUCUCA - 107
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207