Stem-loop tur-mir-5732

Accession

MI0019376

Description

Tetranychus urticae tur-mir-5732 precursor miRNA

Sequence

auucgcuacaagauugAUACAGCCAUAGCUGUGGCAAuguaauacaauaauuauUGCCACAGCUAUGACUGUACCauuuuccagaagcggaa
.((((((.(.(((.((.(((((.((((((((((((((((............)))))))))))))))).))))).)).)))...).)))))).

Structure

a      a --a   u  A     C                uaaua 
 uucgcu c   aga ug UACAG CAUAGCUGUGGCAAug     c
 |||||| |   ||| || ||||| ||||||||||||||||      
 aggcga g   uuu aC AUGUC GUAUCGACACCGUuau     a
a      a acc   u  C     A                uaaua 

Annotation confidence Not enough data

Genome context

emb|HE587302|: 3540777-3540868 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tur-mir-5732

Mature tur-miR-5732-5p

• Accession: MIMAT0023062
• Description: Tetranychus urticae tur-miR-5732-5p mature miRNA
• Sequence: 17 - AUACAGCCAUAGCUGUGGCAA - 37
• Evidence: experimental ; Illumina [1]

Mature tur-miR-5732-3p

• Accession: MIMAT0023063
• Description: Tetranychus urticae tur-miR-5732-3p mature miRNA
• Sequence: 55 - UGCCACAGCUAUGACUGUACC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22113690
   The genome of Tetranychus urticae reveals herbivorous pest adaptations
   "Grbic M, Van Leeuwen T, Clark RM, Rombauts S, Rouze P, Grbic V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernandez-Crespo P, Diaz I, Martinez M, Navajas M, Sucena E, Magalhaes S, Nagy L, Pace RM, Djuranovic S, Smagghe G, Iga M, Christiaens O, Veenstra JA"
   "Nature (2011) 479:487-492