Stem-loop sha-mir-140

Accession

MI0019604

Description

Sarcophilus harrisii sha-mir-140 precursor miRNA

Sequence

uugugggcuuccgguguggcuccugcccuuugugugugugugucucucucuguguccugccagugguuuuacccuaugguagguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcaggauacuggggcgcucucggcaucgga
.........(((((((((((....))).......((.(.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))).).))))))))))

Structure

uugugggcu        ggcuccugcccuuugug  u u       ucucu        -  a             a       u  c  c 
         uccggugu                 ug g gugucuc     guguccug cc gugguuuuacccu ugguagg ua gu  
         ||||||||                 || | |||||||     |||||||| || ||||||||||||| ||||||| || || a
         aggcuacg                 gc c cgcgggg     cauaggac GG CACCAAGAUGGGA ACCAucu gu cg  
---------        -----------------  u u       ----u        A  -             C       u  -  u 

Annotation confidence Not enough data

Genome context

GL834769.1: 1909500-1909649 [+]

Mature sha-miR-140

• Accession: MIMAT0022778
• Description: Sarcophilus harrisii sha-miR-140 mature miRNA
• Sequence: 101 - ACCACAGGGUAGAACCACGGA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87