Stem-loop sha-mir-202

Accession

MI0019606

Description

Sarcophilus harrisii sha-mir-202 precursor miRNA

Sequence

acccagcucagaauggcucgugguuccuuuUUCCUAUGCAUAUACUUCUUugagaauaaauucuaaagaggcguagggcaugggaaaauggggccacggagcuccuccuccucgucuuccucgggacuucggcuuccuccucagcgcccu
..........((..(((((((((((((.(((((((((((.(((.(((((((.((((....))))))))))).)))..))))))))))).)))))))).)))))..)).(((.((.......)))))....(((............)))..

Structure

---------------------------------acccagcuca  au     -        u           -A   A       g    u 
                                           ga  ggcuc gugguucc uuUUCCUAUGC  UAU CUUCUUu agaa a
                                           ||  ||||| |||||||| |||||||||||  ||| ||||||| ||||  
                                           cu  ucgag caccgggg aaaaggguacg  aug ggagaaa ucuu a
ucccgcgacuccuccuucggcuucagggcuccuucugcuccuc  cc     g        u           gg   c       -    a 

Annotation confidence Not enough data

Genome context

GL835536.1: 120399-120548 [+]

Mature sha-miR-202

• Accession: MIMAT0022780
• Description: Sarcophilus harrisii sha-miR-202 mature miRNA
• Sequence: 31 - UUCCUAUGCAUAUACUUCUU - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87