Stem-loop sha-mir-1540

Accession

MI0019607

Description

Sarcophilus harrisii sha-mir-1540 precursor miRNA

Sequence

aucuccucgcaggcgaaaugggucucucuggucuaggucaggaagcucaauguggugggggugauuccauggagcauaugcucuggcucucuggggauggACAUGCGCUCUAUGGAAUCACccccgcuacauaagugucuguguaguaga
.(((.((((((((((...(((((.((.((((......)))))).)))))((((((((((((((((((((((((((.((((.(((..(((....)))..))))))).))))))))))))))))))))))))))...)))))))).)).)))

Structure

a   c  -        aaaugggucucucuggucuaggucaggaagcuca                          a    c   gg   u 
 ucu cu cgcaggcg                                  auguggugggggugauuccauggagc uaug ucu  cuc c
 ||| || ||||||||                                  |||||||||||||||||||||||||| |||| |||  |||  
 aga ga gugucugu                                  uacaucgccccCACUAAGGUAUCUCG GUAC Agg  ggg u
-   u  u        -------------------------------gaa                          C    -   ua   g 

Annotation confidence Not enough data

Genome context

GL836570.1: 10620-10769 [+]

Mature sha-miR-1540

• Accession: MIMAT0022781
• Description: Sarcophilus harrisii sha-miR-1540 mature miRNA
• Sequence: 101 - ACAUGCGCUCUAUGGAAUCAC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87