Stem-loop sha-mir-133a

Accession

MI0019610

Description

Sarcophilus harrisii sha-mir-133a precursor miRNA

Sequence

acaaaaaaaaaaacccauaauuuucaaaucaaacagcucuaaagcaugacaaugcuuugcuaaagcugguaaaauggaaccaaaucaccuauucaauggaUUUGGUCCCCUUCAACCAGcuguagcuaugcauugauuacuacaagaaag
...................................(((....)))....((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...............

Structure

acaaaaaaaaaaacccauaauuuucaaaucaaacagcucuaaagcauga      uuu    a       aa  u  a        accua 
                                                 caaugc   gcua agcuggu  aa gg accaaauc     u
                                                 ||||||   |||| |||||||  || || ||||||||      
                                                 guuacg   cgau ucGACCA  UU CC UGGUUUag     u
----------------------------------gaaagaacaucauua      uau    g       AC  C  C        guaac 

Annotation confidence Not enough data

Genome context

GL841304.1: 692704-692853 [+]

Mature sha-miR-133a

• Accession: MIMAT0022784
• Description: Sarcophilus harrisii sha-miR-133a mature miRNA
• Sequence: 101 - UUUGGUCCCCUUCAACCAG - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87