miRBase entry: sha-mir-24-1

Stem-loop sha-mir-24-1

Accession

MI0019616

Description

Sarcophilus harrisii sha-mir-24-1 precursor miRNA

Sequence

gagcuuccagguagcagguagcagggcugcuguucugagcuguggauuggacccgcccuccggugccuacugagcugauaacaguucugauuuuacacacUGGCUCAGUUCAGCAGGAAcaggagucgagcccgagagcaaaaaagacua
..((((((((...((((....((((((....))))))..))))...)))).......((((.((.(((.(((((((((...((((..((......)).))))..))))))))).))).)).))))(((....)))))))...........

Structure

---------ga    ccagguagcagguagcagggcugcuguucugagcuguggauuggacccgcc    g  g   a         uaa    uc  au 
           gcuu                                                   cucc gu ccu cugagcuga   cagu  ug  u
           ||||                                                   |||| || ||| |||||||||   ||||  ||   
           cgag                                                   gagg cA GGA GACUUGACU   GUca  ac  u
aucagaaaaaa    -----------------------------------------agcccgagcu    a  A   C         -CG    -c  au

Annotation confidence Not enough data

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Genome context

GL841474.1: 1160603-1160752 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sha-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-24

Accession	MIMAT0022787
Description	Sarcophilus harrisii sha-miR-24 mature miRNA
Sequence	101 - UGGCUCAGUUCAGCAGGAA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87