miRBase entry: sha-mir-222

Stem-loop sha-mir-222

Accession

MI0019623

Description

Sarcophilus harrisii sha-mir-222 precursor miRNA

Sequence

ccuuccacagaauaucuccaugaaaagauauggugccuucugccuguuuugucccucauucgcucaguagucaguguagauccugucccuuucaaucagcAGCUACAUCUGGCUACUGGGUcucugauggcaucuuagagcuucucuccc
.......(((((.....(((((......)))))....))))).(((...((.((.(((...((((((((((((((((((...(((...........)))...))))).)))))))))))))...))).))))...)))............

Structure

ccuuccacagaauaucuccaugaaaagauauggugccuucugc   uuu  u  c   uuc             -     auc   uccc 
                                           cug   ug cc uca   gcucaguagucag uguag   cug    u
                                           |||   || || |||   ||||||||||||| |||||   |||    u
                                           gau   ac gg agu   UGGGUCAUCGGUC ACAUC   gac    u
-------------------------------cccucucuucga   ucu  -  u   cuc             U     GAc   uaac

Annotation confidence Not enough data

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Genome context

GL849540.1: 1793800-1793949 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-222

Accession	MIMAT0022796
Description	Sarcophilus harrisii sha-miR-222 mature miRNA
Sequence	101 - AGCUACAUCUGGCUACUGGGU - 121
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87