miRBase entry: sha-mir-221

Stem-loop sha-mir-221

Accession

MI0019624

Description

Sarcophilus harrisii sha-mir-221 precursor miRNA

Sequence

uauguuauccagaugaaaagaauugguuuuguaggaagaacauccagguuuggggcaugaaccuggcauacaauguagaauucuguguuuauuaaguaacAGCUACAUUGUCUGCUGGGUUucaggcuaccugggaauauacaucuaacu
.(((((.(((..((((((........)))))).)))..)))))((((((....(((.(((((((((((.(((((((((....((((............))))))))))))).))))))).)))).)))))))))................

Structure

uauguuauccagaugaaaagaauugguuuuguaggaagaacau      uugg   a    -       u         aauu    guuua 
                                           ccaggu    ggc ugaa ccuggca acaauguag    cugu     u
                                           ||||||    ||| |||| ||||||| |||||||||    ||||      
                                           ggucca    ucg acuU GGGUCGU UGUUACAUC    GAca     u
---------------------------ucaaucuacauauaag      ----   g    U       C         ----    augaa

Annotation confidence Not enough data

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Genome context

GL849540.1: 1794391-1794540 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-221

Accession	MIMAT0022797
Description	Sarcophilus harrisii sha-miR-221 mature miRNA
Sequence	101 - AGCUACAUUGUCUGCUGGGUU - 121
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87