miRBase entry: sha-let-7a

Stem-loop sha-let-7a

Accession

MI0019628

Description

Sarcophilus harrisii sha-let-7a precursor miRNA

Literature search

1 open access papers mention sha-let-7a
(1 sentences)

Sequence

uccagccauugugauugcacgcacccagguUGAGGUAGUAGGUUGUAUAGUuuagaauuacaucaagggagauaacuguacagccuccuagcuuuccuugggucuugcacaaaacaccauggugagaaugaucaugauuuuuccaggccu
((..(((((.(((..((((.(.(((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..)))))))).)))).....))).)))))..)).......................

Structure

-----------------------  ca     u   ---au    c c       uU   G   U             uagaauuac   aa 
                       uc  gccau gug     ugca g acccagg  GAG UAG AGGUUGUAUAGUu         auc  g
                       ||  ||||| |||     |||| | |||||||  ||| ||| |||||||||||||         |||   
                       ag  uggua cac     acgu c uggguuc  uuc auc uccgacaugucaa         uag  g
uccggaccuuuuuaguacuagua  ag     c   aaaac    u -       cu   g   c             ---------   ag

Annotation confidence Not enough data

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Genome context

GL849656.1: 1022775-1022924 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-let-7a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-let-7a

Accession	MIMAT0022801
Description	Sarcophilus harrisii sha-let-7a mature miRNA
Sequence	31 - UGAGGUAGUAGGUUGUAUAGU - 51
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87