Stem-loop sha-mir-139

Accession

MI0019630

Description

Sarcophilus harrisii sha-mir-139 precursor miRNA

Sequence

gugaugaauccauagguggcccggguguauUCUACAGUGCAUGUGUCUCCAGUgugacuaagggacuggagauacggcccuguuggaauaacaaccgaagcccaugucuucauggaaccuggaaggcucagguugagggagagggcaagg
.........(((....)))..(((.((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).)))..((((...(((((....(((((((.....)))))))...)))))))))....

Structure

--------------------------------gugaugaauccauagguggcc   g   -      -   U  A            g ga 
                                                     cgg ugu auUCUA CAG GC UGUGUCUCCAGU u  c
                                                     ||| ||| |||||| ||| || |||||||||||| |  u
                                                     gcc aca uaaggu guc cg gcauagagguca g  a
ggaacgggagagggaguuggacucggaagguccaagguacuucuguacccgaa   a   a      u   c  -            g ga 

Annotation confidence Low

Genome context

GL849732.1: 511066-511215 [+]

Mature sha-miR-139

• Accession: MIMAT0022803
• Description: Sarcophilus harrisii sha-miR-139 mature miRNA
• Sequence: 31 - UCUACAGUGCAUGUGUCUCCAGU - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87