miRBase entry: sha-mir-200b

Stem-loop sha-mir-200b


Accession
MI0019631
Description
Sarcophilus harrisii sha-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ggggcuccaggccggguuaggugagcuggcuccuccucgaccuugauucggggcuaccauuaccaucuuacugggcagcauuggauggugucuguguuucUAAUACUGCCUGGUAAUGAugaugauggggucccgcggacaacguggaaa
((((..(((((((......)))...))))..)))).((.((.(((...(((((((.((((((.(((((((((((((((.((((((.............)))))).))))))))))).)))).)))))))))))))....))).)).))..

Structure
ggggcuccaggccggguuaggugagcuggcuccucc  g  c   -auu       a      c    -           c      uggug 
                                    uc ac uug    cggggcu ccauua cauc uuacugggcag auugga     u
                                    || || |||    ||||||| |||||| |||| ||||||||||| ||||||     c
                                    ag ug aac    gcccugg gguagu guAG AAUGGUCCGUC UAAUcu     u
----------------------------------aa  g  c   aggc       -      a    U           A      uugug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL849763.1: 160073-160222 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sha-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sha-miR-200b

Accession MIMAT0022804
Description Sarcophilus harrisii sha-miR-200b mature miRNA
Sequence 101 - UAAUACUGCCUGGUAAUGA - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87