miRBase entry: sha-mir-200b

Stem-loop sha-mir-200b

Accession

MI0019631

Description

Sarcophilus harrisii sha-mir-200b precursor miRNA

Sequence

ggggcuccaggccggguuaggugagcuggcuccuccucgaccuugauucggggcuaccauuaccaucuuacugggcagcauuggauggugucuguguuucUAAUACUGCCUGGUAAUGAugaugauggggucccgcggacaacguggaaa
((((..(((((((......)))...))))..)))).((.((.(((...(((((((.((((((.(((((((((((((((.((((((.............)))))).))))))))))).)))).)))))))))))))....))).)).))..

Structure

ggggcuccaggccggguuaggugagcuggcuccucc  g  c   -auu       a      c    -           c      uggug 
                                    uc ac uug    cggggcu ccauua cauc uuacugggcag auugga     u
                                    || || |||    ||||||| |||||| |||| ||||||||||| ||||||     c
                                    ag ug aac    gcccugg gguagu guAG AAUGGUCCGUC UAAUcu     u
----------------------------------aa  g  c   aggc       -      a    U           A      uugug

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL849763.1: 160073-160222 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-200b

Accession	MIMAT0022804
Description	Sarcophilus harrisii sha-miR-200b mature miRNA
Sequence	101 - UAAUACUGCCUGGUAAUGA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87