miRBase entry: sha-mir-200a

Stem-loop sha-mir-200a

Accession

MI0019632

Description

Sarcophilus harrisii sha-mir-200a precursor miRNA

Sequence

aaagaucacggcaaggucaucagugcugcuccagccccguggcacgaagugggccucugugggcaucuuacuagacagugcuggauuuuuggauguauucUAACACUGUCUGGUAACGAuguuuaaagagggaacccgacccggcaggug
......(((.((..((((....(((((((.........))))))).....((((((((.(((((((((((((((((((((.((((.............)))).))))))))))))).)))))))).)))))...)))))))..))..)))

Structure

aaagau   -g  aa    aucagugcugcuccagccccguggcacgaagu   ---     g        -             c    uuuuu 
      cac  gc  gguc                                ggg   ccucu ugggcauc uuacuagacagug ugga     g
      |||  ||  ||||                                |||   ||||| |||||||| ||||||||||||| ||||     g
      gug  cg  ccag                                ccc   ggaga auuuguAG AAUGGUCUGUCAC AUcu     a
------   ga  gc    --------------------------------   aag     a        C             A    uaugu

Annotation confidence Not enough data

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Genome context

GL849763.1: 162393-162542 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-200a

Accession	MIMAT0022805
Description	Sarcophilus harrisii sha-miR-200a mature miRNA
Sequence	101 - UAACACUGUCUGGUAACGA - 119
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87