Stem-loop sha-mir-150

Accession

MI0019633

Description

Sarcophilus harrisii sha-mir-150 precursor miRNA

Sequence

cccagcccgucugccugucccggagccccuUCUCCCAACCCUCGUACCAgaguccauccgagacccgguacgggcugugggggauggggagucggggguaagccgcuugagccggaggaggccccccagggagcggccgucuccccggac
.(.(((..((.((((...(((((..((((.(((((((...((((((((.(.((((....).)))).))))))))...))))))).))))..))))))))).)).))).)..((((.((((((..((........))..))))))))))..

Structure

----------------------------------------c c   cc  c    ugu     ag    u       ACC        A a   - a 
                                         c agc  gu ugcc   cccgg  cccc UCUCCCA   CUCGUACC g guc c u
                                         | |||  || ||||   |||||  |||| |||||||   |||||||| | ||| |  
                                         g ucg  cg augg   gggcu  gggg agggggu   gggcaugg c cag g c
caggccccucugccggcgagggaccccccggaggaggccga u   -c  a    ---     ga    u       guc        c -   a c 

Annotation confidence Low

Genome context

GL849778.1: 132881-133030 [+]

Mature sha-miR-150

• Accession: MIMAT0022806
• Description: Sarcophilus harrisii sha-miR-150 mature miRNA
• Sequence: 31 - UCUCCCAACCCUCGUACCA - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87