miRBase entry: sha-mir-19b-1

Stem-loop sha-mir-19b-1

Accession

MI0019636

Description

Sarcophilus harrisii sha-mir-19b-1 precursor miRNA

Literature search

1 open access papers mention sha-mir-19b-1
(6 sentences)

Sequence

acaacuucaucgcaucuucucuucaaacuuuuaauuuaagcacuguucuaugguuaguuuugcagguuugcauccagcuguaugauauuucugcUGUGCAAAUCCAUGCAAAACUGACUGuggugguggaaagucaguagaaaaaaaugu
...........((((....(((.(..((((((........((((...(((((((((((((((((((((((((..((((..............)))))))))).)).))))))))))))))))).))))))))))..).))).....))))

Structure

acaacuucauc    -cuuc   u aa      aauuuaag    guu                 -  -      uc    uguaug 
           gcau     ucu c  acuuuu        cacu   cuaugguuaguuuugca gg uuugca  cagc      a
           ||||     ||| |  ||||||        ||||   ||||||||||||||||| || ||||||  ||||       
           ugua     aga g  ugaaag        gugg   gguGUCAGUCAAAACGU CC AAACGU  GUcg      u
-----------    aaaaa   u ac      --------    --u                 A  U      --    ucuuua

Annotation confidence Not enough data

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Genome context

GL849858.1: 3486496-3486645 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from sha-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-19b-3p

Accession	MIMAT0022809
Description	Sarcophilus harrisii sha-miR-19b-3p mature miRNA
Sequence	95 - UGUGCAAAUCCAUGCAAAACUGACUG - 120
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87