Stem-loop sha-mir-125b

Accession

MI0019637

Description

Sarcophilus harrisii sha-mir-125b precursor miRNA

Sequence

uccaaaauauccguacuauagaagaaagaauucuacugcaucaaauaagacuuuuccuagucccugagacccuaacuugugagauuuuuuagcaauaaucACAGGUCAGGCUCUUGGGACCuaggcggaggggaaccagcagcucuggac
.........((((((...(((((.......))))).)))...........((((.(((((((((.((((.(((.((((((((................)))))))).))).)))))))).))))).)))).))).((((.....))))..

Structure

-------uccaaaaua   guacuauagaagaaagaauucuacugcaucaaauaaga    u     -    u    c   a        gauuuuu 
                ucc                                      cuuu ccuag uccc gaga ccu acuuguga       u
                |||                                      |||| ||||| |||| |||| ||| ||||||||        
                agg                                      gagg ggauC AGGG UUCU GGA UGGACAcu       a
caggucucgacgacca   -------------------------------------g    c     C    -    C   C        aauaacg 

Annotation confidence Not enough data

Genome context

GL850548.1: 23475-23624 [+]

Mature sha-miR-125b

• Accession: MIMAT0022810
• Description: Sarcophilus harrisii sha-miR-125b mature miRNA
• Sequence: 101 - ACAGGUCAGGCUCUUGGGACC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87