Stem-loop sha-mir-205

Accession

MI0019640

Description

Sarcophilus harrisii sha-mir-205 precursor miRNA

Sequence

aagcucaagaugauccaugaguuucucuugUCCUUCAUUCCACCGGAGUCUgucucauaucuaaucagauuucaguggagugaagcuuaagaggcauggaguugacucagcacagcagccacuucaagauuaacucugacacaagaaaag
..(((........((((((....(((((((..(((((((((((.((((((((.............)))))))).)))))))))))..)))))))))))))........))).......................(((......)))....

Structure

-------------------------------------aa   caagauga      aguu       UC           C        ucuca 
                                       gcu        uccaug    ucucuug  CUUCAUUCCAC GGAGUCUg     u
                                       |||        ||||||    |||||||  ||||||||||| ||||||||     a
                                       cga        agguac    ggagaau  gaagugaggug cuuuagac     u
gaaaagaacacagucucaauuagaacuucaccgacgaca   cucaguug      ----       uc           a        uaauc 

Annotation confidence Not enough data

Genome context

GL856783.1: 365799-365948 [+]

Mature sha-miR-205

• Accession: MIMAT0022812
• Description: Sarcophilus harrisii sha-miR-205 mature miRNA
• Sequence: 31 - UCCUUCAUUCCACCGGAGUCU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87