Stem-loop sha-mir-135a

Accession

MI0019651

Description

Sarcophilus harrisii sha-mir-135a precursor miRNA

Sequence

uccggucaagauaaauucacucuagugucuUAUGGCUUUUUAUUCCUAUgugauaguaauaaagucucauguagggauggaagccaugaaauacauugugaaaugucaucaacuaagauggggccaucaguauagaaaacauccuaguug
.........((((..(((((....((((.(((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))).))))...))))).))))..((((((.((((...................)))).))))))

Structure

----------------------------------uccggucaa    aa     ucua    c           U            u g a 
                                           gaua  uucac    gugu uUAUGGCUUUU AUUCCUAUguga a u a
                                           ||||  |||||    |||| ||||||||||| |||||||||||| | | u
                                           cugu  aagug    caua aguaccgaagg uagggauguacu u a a
guugauccuacaaaagauaugacuaccgggguagaaucaacua    -a     -uua    a           -            c g a 

Annotation confidence Not enough data

Genome context

GL861598.1: 2879559-2879708 [+]

Mature sha-miR-135a

• Accession: MIMAT0022823
• Description: Sarcophilus harrisii sha-miR-135a mature miRNA
• Sequence: 31 - UAUGGCUUUUUAUUCCUAU - 49
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87