miRBase entry: sha-mir-141

Stem-loop sha-mir-141

Accession

MI0019654

Description

Sarcophilus harrisii sha-mir-141 precursor miRNA

Sequence

auagagaugcuuacugugauuggccagcucuggcccuggccgugcccagcucuggggccaucuuccagugcaguguuggaucguguaaucgugaagcuucUAACACUGUCUGGUAAAGAUGccccccggguugguucucccuucggugac
..........((((((.....((((((........))))))....(((((((.((((.((((((((((.((((((((((((((((....)))))....)))))))))))))))..)))))).)))).))))))).........)))))).

Structure

auagagaugc      ugauuggccagcucuggcccuggccgugc       u    c      --    u           ----     u 
          uuacug                             ccagcuc gggg caucuu  ccag gcaguguugga    ucgug a
          ||||||                             ||||||| |||| ||||||  |||| |||||||||||    |||||  
          aguggc                             gguuggg cccc GUAGAA  GGUC UGUCACAAUcu    agugc a
---------c      --------------------uucccucuu       c    c      AU    -           ucga     u

Annotation confidence Not enough data

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Genome context

GL861612.1: 2158436-2158585 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-141

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sha-miR-141

Accession	MIMAT0022826
Description	Sarcophilus harrisii sha-miR-141 mature miRNA
Sequence	101 - UAACACUGUCUGGUAAAGAUG - 121
Evidence	experimental Illumina [1]

References

PubMed ID: 20044575
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
"Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
"Science (2010) 327:84-87