miRBase entry: sha-mir-129-1

Stem-loop sha-mir-129-1


Accession
MI0019655
Description
Sarcophilus harrisii sha-mir-129-1 precursor miRNA


Sequence


ucuccuaccuggccucugccuccuuuggauCUUUUUGCGGUCUGGGCUUGCuguucuaaucaauagucaggaagcccuuaccccaaaaaguaucuacagggggcccugucaacgggagugacugccugaggauuucagguaagcaacaaa
.(((((...((((....(((((((.((((((((((((.(((..((((((.(((..(((.....))).))).))))))..))).))))))).))))).)))))))...))))..)))))((..(((((((.....)))))))..)).....

Structure
-------------------------------u     acc    cucu       u     -       C   CU      G   uu   a 
                                cuccu   uggc    gccuccu uggau CUUUUUG GGU  GGGCUU Cug  cua u
                                |||||   ||||    ||||||| ||||| ||||||| |||  |||||| |||  ||| c
                                gaggg   acug    cggggga aucua gaaaaac cca  cccgaa gac  gau a
aaacaacgaauggacuuuaggaguccgucagu     -ca    -ucc       c     u       c   uu      g   -u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL861653.1: 2316521-2316670 [+]

Database links

Mature sha-miR-129-1-5p

Accession MIMAT0022827
Description Sarcophilus harrisii sha-miR-129-1-5p mature miRNA
Sequence 31 - CUUUUUGCGGUCUGGGCUUGC - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87