Stem-loop mtr-MIR5206b

Accession

MI0019697

Description

Medicago truncatula mtr-MIR5206b precursor miRNA

Sequence

gaaggccuucaguaacccucaaaggcuuccauggaaucacauguuaugguuagauuaaucauaacuuugaccagugaugugaaaaaaucGUGGGAUCCGUUGAUGGGUUACugaaagcuuu
.(((((.(((((((((((((((.((.((((((((..((((((....(((((((((((....))).))))))))...)))))).....)))))))).)).)))).))))))))))).)))))

Structure

g     c           -    a  c        ---aa      guua        -   a 
 aaggc uucaguaaccc ucaa gg uuccaugg     ucacau    ugguuaga uua u
 ||||| ||||||||||| |||| || ||||||||     ||||||    |||||||| |||  
 uuucg aaguCAUUGGG AGUU CC AGGGUGcu     agugua    accaguuu aau c
-     a           U    G  U        aaaaa      -gug        c   a 

Annotation confidence Not enough data

Genome context

chr7: 23959036-23959156 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR5206b

Mature mtr-miR5206b

• Accession: MIMAT0023152
• Description: Medicago truncatula mtr-miR5206b mature miRNA
• Sequence: 90 - GUGGGAUCCGUUGAUGGGUUAC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553